Scaffold JGI12421J11937_10003733

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10003733
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6096
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029435	Metagenome / Metatranscriptome	188	Y
F037722	Metagenome / Metatranscriptome	167	Y
F057309	Metagenome / Metatranscriptome	136	Y
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000373316	F072267	AGG	MTEPTLKIGPSGYKLNPEKLKGAPQSVLPYILGCFYFTEDYEYFDVIKDYLDIPEPCKTLEEISQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIDNFEYAKEHGQFPPKLTYSNLIATGSNITSSFVIKQGNDHEGYYTFGNCRSFRYYMPTKPNFVIRFCMKNLLGFFWVDEK*
JGI12421J11937_1000373319	F057309	N/A	MMNPLLQKYEELYGKKEKPKFPRIEDYEGEETFADELKKSKPPILKSYDLDDLKTSFQQVAGQIQTGKAQVVSMNMEFGDHMNKITFEVYVYKP*
JGI12421J11937_100037336	F037722	GAGG	MTKQEIGETIGFYIFVGLMGWALVSFFPLTWGQALIISWMYNKLTDVLE*
JGI12421J11937_100037339	F029435	GGA	MKKQELKELLTPEFLSTLHSAVECCGWDVDMVESMNFCDWCYNVAGQPLPKYDMSFDMEDV*