Scaffold JGI12421J11937_10003573

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10003573
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6227
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024558	Metagenome / Metatranscriptome	205	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F065787	Metagenome / Metatranscriptome	127	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000357312	F061859	AGGAG	MTIEALLVVIALCLFCIYFVFEYQKAATPPYQEPLEPLKPEADMVDQWKAATKADTLDNIDNWNAKVGDKIWHKEAAAELEPTPINPQAAWPFPRGPKP*
JGI12421J11937_1000357313	F081346	GAGG	MMSTLLQLIKAAKPDPNKPITHINPPTVVPTRVMPHKPGYNEIVTVPETEANPDKPKKPKKPRK*
JGI12421J11937_1000357314	F035768	AGGA	MKITIEDRLLASYQAQKLRLRDREDEDYRARVEAKVFEKIIVDRVRRNLRLDLDKGTNVDLDV*
JGI12421J11937_1000357319	F039640	AGGAG	MNIPDLLNQSTRKDGTVDLLQYTNLVLSEACWLIKETPITAAFTTFDAAVAETQRADCFKQVYNLIIENIADAKPT*
JGI12421J11937_100035734	F065787	GGAGG	MKKLEYYEIRQTCKLVDYDLKLAGRGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS*
JGI12421J11937_100035737	F024558	GGA	LDIKEKTMIVILYTEDFEPIIPIDLPLWLLERLEIEGAVRVAVNRPKGFKGEKIPVGTVGNENMPTVRIHYEKLRWRDGSLKTILVTPDEELALTLNPDWLPGQRAPIYSYLGVMRKMHDELIKQIRKNQD*
JGI12421J11937_100035739	F039639	AGGTGG	MNIDREFIKWFYEDAYPEAGSNRRQVYSTTQNSQNINVIDYWMREAFKAGAVAATNNYEVNALEQFEAFNINRNYPL*