Scaffold JGI12421J11937_10003154

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10003154
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6620
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F004978	Metagenome / Metatranscriptome	416	Y
F045555	Metagenome / Metatranscriptome	152	Y
F072092	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000315413	F072092	GAG	MSNWVQYEVWSEDGAGHQELVLTTASRKEALAIAEKEHKETSAIVTVYEETVDGDYELVKEFS*
JGI12421J11937_100031543	F045555	AGGA	MTSIFIVRAENSGAPESIIYGVYPTVELAKARCAVLEGEDFEYDFAFFDEVKVGAMGADCEFANR*
JGI12421J11937_100031544	F004978	AGGAG	MITADTLKTLTTFTAPALTRAARDAGYKGPEFTSAKFVGISNGGQFCYTVVFDVDTLGCSHSKVWLDYNHTMDRVFVDYHLTELA*
JGI12421J11937_100031545	F000354	GGAG	MTTQYDRFASFDMNEACDHFDSEKQSNWKKIGKFIIADGQDYVNIMETEFDFEDTADSEYAAFDAGVKYALTRMNRAFEAAGVDLQVCETDLVESMGFVLVRADDEPEDFVKRVLKKPVMMVDSWV*