Scaffold JGI12421J11937_10003084

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10003084
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6702
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F009134	Metagenome	322	Y
F010673	Metagenome	300	Y
F079951	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000308416	F009134	AGGAG	LRKETEAIISSEISVRTEKSLEALSALVRGKLAEDASSTLERVNGYCLDGIKDEATREQIIGSVAKRSALVFGWSEAGEASNVSITLLGSMPDRFAEVVVSNPV*
JGI12421J11937_1000308418	F079951	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFNT
JGI12421J11937_100030842	F001964	GGAGG	MSRNLFAKPKYKVQLSGAIGWSDLKERVVTYQTVEFASRKDAEKAARELNPGEYTQGRIRVVPVELGEDYDIYPTLERPKP*
JGI12421J11937_100030844	F002227	N/A	MKLTIQSRDNAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGTQILELIIEREDGDRLLQIGEVEELK*
JGI12421J11937_100030848	F010673	N/A	MNPKLLPILERIIARETILLSFHADRLPQSALAYIRQNYVMDSFLSDDEQDLIETLAPFADNIAGSFREGNAPDDSVYHLFDDGSLWLRTNAYSSIWTDARDFAVEIILPRMTLSRMDAQLLRAIEMDDAVESVRQDFFTAFARIVSHELEIQWSEARERWYNYCQSTGESDRLELGGYRQGEAEAREYLEWIKTIA*