 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000756 Open in IMG/M |
| Scaffold ID | JGI12421J11937_10002320 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7686 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019600 | Metagenome / Metatranscriptome | 228 | N |
| F032144 | Metagenome / Metatranscriptome | 180 | N |
| F033695 | Metagenome / Metatranscriptome | 176 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI12421J11937_100023201 | F032144 | N/A | MDASCPQMNIHETLFYSFITKECPTFMADKLIMLFRVAMMVFRNGNVSYNAVMICNTLMVDFFCRNHRILARGLGLEFIDNVLFRLIRNEGFWHFLNAGNVHLFYLDYRTKMMNLICHQLAKMYGHEHFHNIFRNLSPGMRGR |
| JGI12421J11937_1000232010 | F019600 | N/A | MYAPDTDTVELKMGYNSEKSLKEARETVYEGRKAVEELNSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEISKTTSLVSSSDIGEMKEIIEKLANWELNEQ* |
| JGI12421J11937_1000232012 | F033695 | AGTAG | MEGFNQEFKLAMEEVQELTKRAAIYSSQEYNKPMKIDIKAIQYYRIEVNKRIDYIQEMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNXYEXVLEKXKNETXXSYWKDYISIXXNKITEGS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |