Scaffold JGI12421J11937_10001020

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10001020
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11248
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002935	Metagenome	519	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000102021	F048982	AGGAGG	MTIELRDVLSITRQIRGNDYDSGTHYLLGYLWANTPDSEKFRIAKSFADELGFKVKNEIAKE*
JGI12421J11937_1000102032	F002935	AGG	MRERTRGYEGKVVNGEKLAEIANGIYALQYSNEFSECEVDDLLLIELEEKNVFGDPKYALICSEGVGWEQDTYGCLEVPTNIGPMGLWNGRVFISVDTVKSCMTANIVDISDYIRVFGDRLDSNCSLWQSKMSVAPATIGV*
JGI12421J11937_1000102033	F001507	AGGA	MTTEYKPYTISEIVTRIYEDNYSHFDFMDNMNGGDCDCSLHLTMKTIEYYWGE*