Scaffold JGI12421J11937_10000936

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000936
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11685
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F078719	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100009362	F099303	AGG	MNFIEFTYTKADGTKSKRAVLPLVGPTTFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPEKMSDITTDYV*
JGI12421J11937_1000093626	F015601	GGAG	MAGYTKEFLVDAFMSRYLGCDHLSIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKTKVTA*
JGI12421J11937_100009363	F078719	AGG	MEIIEIYLLFALTTGITSCYVFLSPAIALARESGIRNSFTDSTLLSYLIYITITTITAPFSVLPIFIPSFAERFKTGLEKSVMENQI*
JGI12421J11937_1000093631	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKPKDNHA*
JGI12421J11937_100009364	F045760	GGAG	MASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHDNIRVAKLFKEFTGRASADLFSSNPKVQSAALAYRPDWDKVKIIEGRVNFSLGARAHDSKGNLVWK*
JGI12421J11937_100009365	F038245	AGGA	MKIYFGNANEDLFSDGLFVVNDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALQEIQKVSEAIKEANRLTERAESRTKGYVYNSWNDEFEVDFDTE*