Scaffold JGI12421J11937

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10000624 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000756 Open in IMG/M

Scaffold ID

JGI12421J11937_10000624 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13980
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

13980

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (42.86%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F012111	Metagenome	283	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000062412	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGNVWLYDVDQNSVQNLSASVSLQNPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATTDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRNTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEIVNIAENDQASLLWSGSAVVFDNRLLMTAQPRYNAEGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGAKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDVPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCNTLDACDVNPFLYTSE*
JGI12421J11937_100006249	F004664	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLNEFVRNHYTANAIQIPSNIDDLITEYACRNGADCSYDEVKIHKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRANICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12421J11937_10000624

Overview

Ecosystem & Geography

Associated Families

Sequences