Scaffold JGI12421J11937_10000578

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000578
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14415
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002386	Metagenome / Metatranscriptome	565	Y
F012661	Metagenome	278	Y
F012971	Metagenome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000057816	F012661	AGG	MESKPKTFDPRNPQGKKGQVVYYSDQEKEALAHIGSGSVAEGARIAVRWAAHFWRVGLRPDHDLNHVGICLFVDDEIADEL*
JGI12421J11937_1000057827	F012971	AGGAG	MIDIKHETWAALQDFTSDDVADAICDSKAILEAILCNAWADVADMVRARVELKAQRMAEISLELPITPWVDDEEELNLWRFYRMERLQEQIKQEQGAIPTINPYHKRGQ*
JGI12421J11937_100005789	F002386	AGG	MKFAFIPKGQYKIGQIITVHNQPMRVESYTHTGKNVTVHTLENAPKFQRILCVCTDAPSIVGA*