Scaffold JGI12421J11937_10000446

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000446
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15997
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000044611	F027413	N/A	MATGRDDIDLQCNAGYARMEIINVNNTAFDIDVTDALTLELKNSSGTYVPVFGGTVSDFGISVRSPEEIGFITIGNILAVGSLAKLTKALFPDALPKTEDGTQIADILNELLINSWFEVAPALQWADYDPTTTWANAENVGLGEIDQPGLYEMISRAADPFSSYNLCAQIAQSALGNIYEDKAGRVCYADGDHRTQYLSANGYTTISANYATPSSVKSILQIGKIRNSLVFNYGNNYASQATALDADSIANYGRYQRSVNTNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNSELPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFCEGFAIRATPQYVDITLTLSPTDFSLVAPQWDTVSPANLVWTGVNATLIWENAFGGLT*
JGI12421J11937_1000044615	F002269	AGGAG	MKEQAIAAAKSYGRASLASVAALYMSGITDYKVLANAFIAGLIGPLLKALQPSEKQLGVGSK*
JGI12421J11937_1000044616	F015095	AGGA	MERAQLVVGIALGSFTILGLGAGLVRHLVKYYLAELKPDGNGGHNLAGRVERIEQRVDRIYEILLEDRLAK*
JGI12421J11937_1000044617	F023592	AGG	MNSLDILIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAIAKALRDSELI*
JGI12421J11937_1000044618	F007029	GAG	MGFLDNYEDVNARIKRFRLEFPSGRLVAYIEDLDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCAHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV*
JGI12421J11937_1000044619	F066777	GGA	MSEITFIKDGLATTIHDNGDMTVVAAKQCDECYEWRTELGGFNVRDVSGEVVLWLCAQCRA*
JGI12421J11937_1000044620	F029049	GAGG	MAMCTMSRIAKVVLDRSQEITAHRVGLERTITRNAEVQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFIPSIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYHLLGWMPVHMAKQPRYKHPHQNNYWVPRSSLFEMQYLKRSNYGDV*
JGI12421J11937_1000044621	F030767	GAGG	MATYKTKCRLCGKMTDHIERVVTDNLPPYVKSLQCVKCGVMGIVLMEDLKDADV*