Scaffold JGI12421J11937_10000094

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000094
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29999
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000009414	F020206	N/A	MALDIKKANKTYEFSNLSVSEIVASKAVGKDILIRNYADNTAAKAAGLANGDLYHTAGALKIVYTP*
JGI12421J11937_1000009427	F006666	N/A	VNPKKHKDFKEGIADEVGVHPQVVDDFISFYFSKLRKKLSALEYPRINVDGLGTFYLRKTKLENSIKKNKSMLGNLTKRTYNGYAQSETIQSNIEQMCKALDQMEADILTKKQFKIK*
JGI12421J11937_1000009428	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKIELTKFCIFLTEQEIFKSPQSARNALAKAEKKKLIVKNGVNKKTISINKTINVQIDGLVLLDYKILGRESQEA*
JGI12421J11937_1000009430	F005243	N/A	MAQLKTSNPLDEKEPILTKEELNARREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGQVPVDSEEARAFKEAMENAASQID*