Scaffold JGI12421J11937_10000069

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000069
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33454
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (81.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F030095	Metagenome / Metatranscriptome	186	N
F070122	Metagenome	123	N
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000006912	F099281	GGA	MAIVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDTSALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGDYSTDTYSMTFDSGTID*
JGI12421J11937_100000693	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNFHAAKLQVRDTQGGKKLAFTLTEQDGIQISPTEGKLKISISADRTNKMFYPKSAYDLVIVDPSVNKTRLLEGYMTLNRSVTV*
JGI12421J11937_1000006932	F001106	AGGAG	MSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAIERDTEEIEILPKFDPKAQPEDTLLVRMTRDNHRYDIHGYTFTKDHPFIAMSEDDAQKIFDTEEGFRLATPKEVQDFYN*
JGI12421J11937_1000006934	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGMISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDQITYREKVTNVRDMNGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF*
JGI12421J11937_1000006935	F012456	GGAG	LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTKPRSLHHVYEWNKTGIPSSRLFNLYAIEMEGLSFRINYNFKLSKSSVPTKNKKQKKKYVFGNKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVRKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNLKMAKALDVPMNIKKVQYSFTPGKIRIQADASLDAAFGGSL*
JGI12421J11937_1000006936	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKDSFIFDAYDYYSDNLGKEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKILFTIYSTDVTEIYEIRNLMTDLFRRMDESAVDVNDQNRPSKLKFHSIHIVETSPIDPSLELKGFMSTDVILEVKYSRTTDKSGRFN*