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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000756 Open in IMG/M |
| Scaffold ID | JGI12421J11937_10000046 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38336 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (81.36%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012451 | Metagenome / Metatranscriptome | 280 | Y |
| F026484 | Metagenome / Metatranscriptome | 197 | Y |
| F071029 | Metagenome / Metatranscriptome | 122 | N |
| F080900 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI12421J11937_1000004621 | F071029 | N/A | MSENSNLDERQEKFLNWLCTPSVGRIPSSQNQYAKQESIDETTLRRWKKKPIFKSEWERRVTEQQQSPERTQQLLDNLFQRALEGDNNSAKLYLQATGRLAPVQLQVEHSGKASELSDSELTELIAASAASEQRFRLDTKVSKDR* |
| JGI12421J11937_1000004622 | F026484 | AGGA | MTTTNDAMYEALSVAYPSTGQTLGDLLYAFWSEKGLQYRGTLEYDFYVAAGATGATRGDLANDYFVRVYPLEFDTLNFDYNDPDEWLELEVFNRTDTVEQQIFIN* |
| JGI12421J11937_1000004628 | F080900 | N/A | MKKIVSEIHSLTWTLAGTGMVLITLSGSTRTLGIQITLVAIMVHMLGALLGDKNE* |
| JGI12421J11937_1000004644 | F012451 | AGAAGG | MAYVQMTATALRDTVRSITDLDSEDLPDSLLNVYLRDGYYRILDLEKRWSFLEKSFTFNTVAEQRAYTISSFTADPISQVVSIVDNNNIGFRLDMVGHDMAEQTYVGSYDTSGDPLFYSIWEGKVHLFPKPNNVRTLVVRAYREPIDWITSEGNVDASANLHFPLVYYACSRVYQRLEDTLMAGEYKRSFDEGVTLAAANISKPTSHANLRLNAGQTSGRPTYNGWLQTMAKNLKVNQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |