Scaffold JGI12421J11937_10000001

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000001
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94033
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (81.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007028	Metagenome / Metatranscriptome	359	Y
F012571	Metagenome	279	Y
F098749	Metagenome	103	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000000114	F099177	GGA	MTSYKEQYYSLAEQEMQDLISSTKKGSSKAQEELLKVFSNFLTKYVSLLYYGKFNLNDYDIRRFISLFIKDPSTRFALMKNKMNSHNLKIINECMRGIHYMTKRYGDEEDIRQTVYMTFFQCIYRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDDATNDEGDENFVIGFKADPIEHSMEELLATDSIDEFWVLGDKAQPPFDRLSVQERQLLKWRYADLKRSSQISLIINEHPNTVREHINKIKQKVKEIMKEENMEELFFLFKTETE*
JGI12421J11937_1000000122	F012571	GGAGG	MEENNEEDEVIGVCSECKSDQPEKYMYNSPFAQEGKSVPCKFCGGVVIITYRQTRNRALDGSDKSRGI*
JGI12421J11937_1000000182	F098749	AGGA	MYKRSWILHHWIKSIISQSIPINDIGFIFEVSPDDTTTIQALESWKKFDKRIPYFEIKIREDIPHFEHENNGRQWSMSKYLNMVSLRNSLLESVRKVEPEYYFSLDSDILLTNTNTIELLIAHIKSGADAVSPLMFMTPFGTMYPSVMDWRLDVPVKAFRKEKYELGHYFQSDVIMAAKMMSKDVYNNINYTLHEQGEDVGWSLECKKAGFKLYSASYIYAPHIMSEVMYESFLANGDNRQELLMSSYTKV*
JGI12421J11937_100000019	F007028	GGA	MPKITKTAMEQSIDSPIDQVVNILSSEISISTNPVFICGVNRKINIGNFENIDVYAGITLPLNDVSLEDKDKLTEIIEAAASYGFSIVSKETGERYQLIKESQQGK*