Scaffold JGI11851J11668_1005688

Overview

Basic Information

• Taxon OID: 3300000754
• Scaffold ID: JGI11851J11668_1005688
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 548
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004864	Metagenome / Metatranscriptome	420	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11851J11668_10056881	F004864	AGGAGG	MDTIKLWARNGDAVRQAIELGELGHLDTASEELTDEFVLFAIQSGLLSQWAEAFPDPRHEPEIGMEVIVASHLAARFAGLYSMRKAGYVLRSAAVLGALGYSVEVLAPEQGLSWRGTSDDKLISGDVLRKLLVQLENHVDLNQPLRVPPYEPSLAVKGR