NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11851J11668_1002722

Scaffold JGI11851J11668_1002722


Overview

Basic Information
Taxon OID3300000754 Open in IMG/M
Scaffold IDJGI11851J11668_1002722 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051495Metagenome144N
F075887Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
JGI11851J11668_10027221F075887N/AMAMAARTTAVVSFAICFIFGVGCCWRGAVANGGGSCGGCVDNGSSCGVAFKLSNRFFGALAGAR
JGI11851J11668_10027222F051495N/AMKSDRVIESAIRAAQNLLWQNLPPTHKLPDAAAVARLRDLVRSPAVKSALLHSNDTFLAFVLRAVEFVLADQFRADREIIDHLWDVLDDPHLNKALGLRQNS

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