Scaffold JGI11851J11668_1000093

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11851J11668_1000093

Scaffold JGI11851J11668_1000093

Overview

Basic Information
Taxon OID	3300000754 Open in IMG/M
Scaffold ID	JGI11851J11668_1000093 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2099
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006680	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11851J11668_10000934	F006680	GGAGG	MKISKFVWSVLVAFATVALIAPQQVEAXIVDGRVNGQIXFTGSGTITESNGININSNGINKLDFNGQNFPHGPLSVTNATGDFIPIVGSQANFNLPIRWTGSGSS

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