Scaffold JGI12547J11936_1017829

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1017829
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1736
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F064496	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10178292	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDLEKAKK*
JGI12547J11936_10178294	F033350	GGAGG	MNVDVDVPKVKWSMLEWKSPEEKPKSDERVLMDIGGEVSVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW*
JGI12547J11936_10178295	F023833	AGGA	MKSHSDQLQEIVNDAMRKAASSERERCADLVQRLADGTEDQVIRDILNEVVVAVRRLGDER*
JGI12547J11936_10178296	F064496	N/A	IVVLIDRNLSTTPAEEVPHGGFEDINTDKYENPIKVETVKPDQISKSEFADITAKLNAVVFKTNGGEPRDMELKFGKHKGSTLRQVAAFGDKGLDYLEWLSKQELKPGADGKPYKNDIIRNEIIAEILAEADSIQKGKPEDEIPF*