Scaffold JGI12547J11936_1010378

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1010378
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019949	Metagenome / Metatranscriptome	226	N
F031075	Metagenome / Metatranscriptome	183	N
F039010	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10103781	F031075	N/A	MSQEKSTSVSETVNRKENPEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDAPISYGPLERIWNFKKQIREIDPNWILADEITLLEHQVLNQIDVXDINVPWNSARNKLRYIXLHQTVTKLRTIHPNWQMYLEDSKNHHFCNCYSCSEIKRKYQDKLDATSSEELSSEEENGK*
JGI12547J11936_10103784	F019949	N/A	MYQEKNRYSKRILRFADDLLYNNPIAEDEXIKEILRXELEKSIDKSVVFQLAFNTFKIEMQEIKMLRLIEKLLHTVDKMHNLSPLQKARKFSKIYELKQKIIQINLNWKISDSFHLKKYKILTLIDKIDVKIEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKID*
JGI12547J11936_10103785	F039010	GGA	MEENEDLDASEVDSHRSDDSNKVKHRFHDFMSHEIEILDQILVEMISVVENTSENIIPQLERCFECIDNMMRYANQFINQAQAVNMKHFIRFYSLYDRIRHSIMRTLTIINNLRRRNLLLIVPLVKDLTLDLDEIKVLVSRTTLEQVEEVLEGYRIKRSHIRRKIESFI*