Scaffold JGI12547J11936

Basic Information
Taxon OID	3300000736 Open in IMG/M
Scaffold ID	JGI12547J11936_1007329 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000736 Open in IMG/M

Scaffold ID

JGI12547J11936_1007329 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2950
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2950

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F017597	Metagenome / Metatranscriptome	239	N
F022147	Metagenome / Metatranscriptome	215	N
F022593	Metagenome / Metatranscriptome	213	N
F037570	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10073291	F017597	N/A	MKKSFRSEKLLIELAITRKESIKTTKSSKSTLIKTEMITRILIAALKAKQVIAIRFQVN
JGI12547J11936_10073295	F037570	AGTAGG	MNIKKLDLLKFRNLKFRASQRQVVINRLLRKKDLERDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY*
JGI12547J11936_10073296	F022147	N/A	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEETYNVSQYILVHYFKIDDLIKKESYPLQEVMTFHNKKCRIQKSKDIVTLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQET*
JGI12547J11936_10073297	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCENE*
JGI12547J11936_10073298	F022593	N/A	MNRQEELKFFRDKVEQIRRYKLANYLAKRDIADILLMEDLETESRRSLTHNHELLGRIDLLLGILEGIGELIIEVKEQEAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12547J11936_1007329

Overview

Ecosystem & Geography

Associated Families

Sequences