Scaffold JGI12547J11936_1006147

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1006147
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3238
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F003379	Metagenome / Metatranscriptome	490	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10061472	F003379	GGA	MKKIYALIALTATAVFSGLAMSKFLNWAGKQEDIFDFDLDEDIDSEDF*
JGI12547J11936_10061477	F002489	GGAGG	MEEKDPQALEDNLPMVNYIMLHRIYDMLTLIAKGSVGGEEVGKMVQYHKEGFLLGPSPSYSIEEKEENGD*
JGI12547J11936_10061478	F092052	AGG	MLDECKNGQCTCEQEENFFHVKVIPQNSANFSAAKEETFSSYEFEGNAILDKDAMGREIFWNDMGRP*
JGI12547J11936_10061479	F093318	AGAAG	MKIQYVSKYLSLSKEGLVPELLCPMDQGSLLPNQDGEDRVFIYCLSCEYKKILGSKDYDDIVRAVENVG*