Scaffold JGI12547J11936_1005883

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1005883
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3323
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F027777	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10058832	F027777	AGGA	MNEELPTFWHQEPAKKKLPNETTDEWIVRVFGPIPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ*
JGI12547J11936_10058835	F005702	GAGG	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELMLPSKNWVGRN*
JGI12547J11936_10058836	F005846	AGTAGG	VPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVCLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKATDDGKYPFITNPNYCSPAWQKQRIRW*