Basic Information | |
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Taxon OID | 3300000736 Open in IMG/M |
Scaffold ID | JGI12547J11936_1005142 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3562 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F010462 | Metagenome / Metatranscriptome | 303 | Y |
F030735 | Metagenome / Metatranscriptome | 184 | Y |
F096923 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12547J11936_10051422 | F096923 | N/A | MKTIAIVVLWFVFIGVLATFVSCASGHHCDAYGQTKQVETKTVSK* |
JGI12547J11936_10051424 | F030735 | GGA | MKIVFLWYLMTGTVKYQQTMDGHKQYALFFKDGKVVDYAYKAEILEYIKSGTFEYDETLELKK* |
JGI12547J11936_10051427 | F010462 | N/A | MLYQLPNGKVVHLSIEEYLELTDLDIQFLMSIDYGEHILDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDIPSDDLPFDDIIDLEDPMDN* |
JGI12547J11936_10051429 | F000716 | N/A | MYKMEKLKQEIRNYQLQSGKTYMQYESDGYSQYQNYLYKRALYGLNALTKEELDTMCSKKKQRILNVYKRAQKVLNVFKQQVTNQYSNYIFQTLFPKSPWTEAMVTYSEVDEKYTNTLTFKDLNIGKSDIISIFMSEGILPKNFLSLQEAPVTLPRLKNEAKA* |
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