Scaffold JGI12547J11936_1002104

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1002104
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5619
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F026550	Metagenome	197	Y
F035669	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10021041	F026550	AGGA	MAQSLDIYIDTTNGNLVAAGSARNGTLPTLTRNDSYNLRVRLQERDQSGFLRDSDLTGSSIKLGIGGIDADPTDGQFKLVLNSVTSTAISFNATTTQVYNAISAIASAGVGVATYGNEQFAYLITSATLNTAMSFGGDAFTLFPTSSVLVSTRRFPASSVAAQQVIRLVRNPAVYSDTFVASPTAGVVSLTKVQDGSSTQNETYDLAIGSDAEGGSVVLNYGTNSTT
JGI12547J11936_10021042	F035669	N/A	MRENQLNELQGTSILTKSFFNKLIRRIECTKPLAGFGINIKQQENGIEISTADTSGYNAITLNVCSNGTPIEILVLAKFPDDYN*
JGI12547J11936_10021045	F025225	AGGA	MITVELLNQTKFMHKLQQYQEASKKNMAEVINSKLGDVAVTAIGTTYRTTAAKIASELQRVEGKVVTKKVFKPIGFTKNGKVKKRKIGEYAVGYKAQNVNYVGTYKLVNWLLKNRGLPTLGKTKQGTGGLGMGTKPGTIGALARRLVAGRKSSVNYIRNGWAAAAAVFGKRANLTRGDYKPSAIKRLGGGTKAESKKSQMEGIIFNRAGDLDTRFYPVRKRTVSGAAKIGMPGLKMAIDKVMNDMNVYLARKNKEASDKLNL*
JGI12547J11936_10021046	F019102	N/A	MSISLEEELNSAFISPEKEFMGEKLAPYTEGSRLLLLQVRDDEDSSFYFIWSFIYVHILLAKNKKEAIKLAWNKNLFREKIMEYIEGKTESDREVATTIVSNILDEAQKGKVDVIPTPHQPDLGNA*
JGI12547J11936_10021047	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRSLDPVTRIIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATPEQRRAILKHL*
JGI12547J11936_10021048	F006138	GAGG	MAAVTIGTPGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALLALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*