Scaffold JGI12547J11936_1001951

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1001951
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5821
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10019512	F000258	GGAGG	VTANYKLDAMLELRKYLWEELRTREIFNEEDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVAEINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSVHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL*
JGI12547J11936_10019513	F001900	GGA	MLIQAASGLERMMHSNQSGPLKDSTVAQISAYVYYEAAVISKLTTNRSFQNAFGKIVFDQINSDFGNYIDALARNKPKSLHHVYEWKKAGNKTARLFRLNKTAQIGLSFGIDYTFLPSKSMVPSQSGRRRHVFANKASIMEQGKPLVIRPKNAERLVFQVDDETIFMPKGASVTVKRPGGSAATNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALKVPANIKKVQYSFSSNTIRSQADDALTLAFGGAM*
JGI12547J11936_10019514	F001229	GAG	MSSIVDSVLSMNLDVYRQYEVQDPDTGAIVKEWNYSRTLACHAKGIISNTSTTGSGNRQTFSNKYVDDQVLQVRTSEKLTAREKVTNIRDSDNNVIWQEINYPTDSPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQLGQ*
JGI12547J11936_10019515	F005054	N/A	MAEVLIKSQSPIVHQVFWNGEIAVTDSLPIVKIYDITLDATINPAVLPTTLLNTLTASLDENNPGTYVVNVPYALTNRNRTLKLQWEYSVGGTAVTKSDTVFVITPYVDFNNVQDLGFSTDPSDPGYKSYKELLRAERYARKQIEQYTDQSFFLYDDVYVAYGYDSDTLPLPAKINALHSLTMNDTLLLDNINNINNWNFPVQISESGYGIRVNRAGLVDNTVYTANGMVPPSIHDYSGLFNSGVPYKVTGRFGWSEVPGNVQLAAIELMKDYFSKDTTWRNKYVKSISTFDWDFEYTGDAYTGTGNAFADSLLADYVLTIKAEII*