Scaffold JGI12547J11936_1001269

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1001269
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7120
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10012691	F005846	N/A	SHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFITNPSYCSPSWQKQRIRW*
JGI12547J11936_100126913	F024265	AGTAG	MNEPFTSSEAKAKGILSDRYPGKEMSKLYAENRNQATIDMLRDAVFTLITNEIPTCTIAQVLRKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE*
JGI12547J11936_10012696	F023833	AGGA	MKSHSELIQDIISDAMSKAAALERERCAELVQKLADGTEDQVIQDILNEVVVAVRRLG*