Scaffold JGI12547J11936_1000824

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1000824
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8522
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001129	Metagenome / Metatranscriptome	768	Y
F003660	Metagenome / Metatranscriptome	474	Y
F010395	Metagenome / Metatranscriptome	304	N
F010464	Metagenome / Metatranscriptome	303	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_100082411	F060863	N/A	MLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDLADAAEVAFINCLEVRMYNLLNA*
JGI12547J11936_100082412	F001129	N/A	MLGQGGTMEFVDGAVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGKSLSAGIVISGRNGGKITAVTPSVGSVIGFTFL*
JGI12547J11936_10008242	F003660	N/A	MNNQTKAKLKAALATGYIMLTACLGIAFFGRFLFALITN*
JGI12547J11936_10008244	F010395	N/A	MHEYHSLRPAKALTNALERLMIAVDNADLEGNHALLLEYRKSCELLGYDPAMAQWAGTKEVSIASQQNLADEVQVSYFHALNPEE*
JGI12547J11936_10008247	F010464	AGG	VNLIETSVVTTLGAIAGGVVAWFTKGRFESESLQVKQAQAVLAMWQATAEAQNKELVELRNEVVSLRQRLEEMEHTIHELQSENAQLKNLS*