Scaffold JGI12547J11936_1000416

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1000416
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11425
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F005845	Metagenome / Metatranscriptome	388	Y
F006503	Metagenome / Metatranscriptome	371	N
F032960	Metagenome / Metatranscriptome	178	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_100041610	F006503	N/A	MDLQMTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITHSLNAPANPEQ*
JGI12547J11936_100041618	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFDGMAEFDHIVARDEPDNIESHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTKTGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQDLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*
JGI12547J11936_100041620	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGFMGWFPKKYDGAAHAERAELMKKYAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT*
JGI12547J11936_100041623	F032960	N/A	MATTVLSGSPQVATPVYNKMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPTTSYGFFDVAKVVETLITPTKPSLTQTSFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTLSGNVSFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYADGYGWLSIGQFNYGVEKAYIQYWSATGGTFARQFDVSASGTSGSTVIRFGVGPMNLKALTSGQCSDGNPGDYLFQGNAGDFYDVYFQKGSNITIRQRYIIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVE
JGI12547J11936_10004165	F005845	N/A	MLNPKPMKTTPTDFRRWQIHIRKECVNCNRPDKSETIKAWSVNWTLLGRILQAKNA*
JGI12547J11936_10004168	F001345	N/A	VNAEDTILELYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGLSHPD*