NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12535J11911_1013558

Scaffold JGI12535J11911_1013558


Overview

Basic Information
Taxon OID3300000734 Open in IMG/M
Scaffold IDJGI12535J11911_1013558 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002246Metagenome / Metatranscriptome578Y
F017016Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
JGI12535J11911_10135581F002246GGAMDDDETHLHVTYASHWDMDDAFCSRMCAAIAAGLESAPIGVVTTPGTKNPKYVPTEPRLLGFSLVDMDV*
JGI12535J11911_10135582F017016AGGAGGMSNKAVTQMTDPEYTVEFDGKETYVMRNGVKLAMRRDDRWVSIEPGIAVRDIVEEGRHGIEVRMTVH*

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