Scaffold fpDRAFT_1007124

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold fpDRAFT_1007124

Scaffold fpDRAFT_1007124

Overview

Basic Information
Taxon OID	3300000730 Open in IMG/M
Scaffold ID	fpDRAFT_1007124 Open in IMG/M
Source Dataset Name	Illumina Fosmids (spades contigs)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Illumina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27909
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From San Jose - Santa Clara Water Pollution Control Plant, Ca

Source Dataset Sampling Location
Location Name	San Jose/Santa Clara Water Pollution Control Plant
Coordinates	Lat. (^o)	37.434249	Long. (^o)	-121.946397	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070896	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
fpDRAFT_10071243	F070896	GGAGG	MEINFASAGSMHLDALVMARGQYSLEVVGPGDAIAFVLVRGTLQITRQRAGEPASYCLHATPRAPLIILNPGTYTIVAERSAFGLRGTRRRR*

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