Scaffold KanNP_Total_F14TBDRAFT_1000822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KanNP_Total_F14TBDRAFT_1000822

Scaffold KanNP_Total_F14TBDRAFT_1000822

Overview

Basic Information
Taxon OID	3300000709 Open in IMG/M
Scaffold ID	KanNP_Total_F14TBDRAFT_1000822 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1863
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034254	Metagenome / Metatranscriptome	175	Y
F052083	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
KanNP_Total_F14TBDRAFT_10008222	F034254	AGGAGG	MTFQSAHGYVLFETGPACTILRAPLFGEVLLEWKRHEEWTARPADAPRWEFEARRDVDALKGHRQTVLVLGRYTLTYWPWEMVRKLLLNRRTTRRTAPEVPPPPLS*
KanNP_Total_F14TBDRAFT_10008223	F052083	GGAGG	VAYRLSLTTVAGLGLAWSLAVSSGVAAQPLSATPAAPPSDAQIRSELRRLNTMRTDCLAQAQQAVTLQRTASAGGRFSDAEAYGQILKDKMACADKANQDLVRLQTQAGPGKAALFVSEDRFHQEYRQGLQAQLGALQRLSGGLVGHDSVTYERFAQQMDALRRQTDTFKNRYIRLLKEPDTQDLAKAVFQASDLLVASAQAWKTQVKAEVDITELAPKGPSAQLARAEAVRDTARTQRAGQWEAAQQLISQAATLAATR*

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