Scaffold ARCol0yngRDRAFT_1002064

Overview

Basic Information

• Taxon OID: 3300000652
• Scaffold ID: ARCol0yngRDRAFT_1002064
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1547
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023972	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
ARCol0yngRDRAFT_10020643	F023972	GGAGG	MPSKPLLTLAGLISLLALVLVPAAPADQVFHXSHAAVHAVAGAPLKSGFVNDIHSNGAVNSAREEYHLNGAQPNTSYEVHLLFYEDPSCAGSPSSFTTAVLTTNAAGNGNADVTFAASPPNNPPLQVGIVWQFTANGSAVYATDCVPVSID*