Scaffold AF_2010_repII_A1DRAFT_10026149

Overview

Basic Information

• Taxon OID: 3300000597
• Scaffold ID: AF_2010_repII_A1DRAFT_10026149
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1588
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F001070	Metagenome / Metatranscriptome	787	Y
F006874	Metagenome / Metatranscriptome	363	Y
F019919	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_100261491	F001070	GGAGG	MSSLDKVVGWFPHSSKEWIEFIIVAVLLWLLMVVVISELEVIPI*
AF_2010_repII_A1DRAFT_100261492	F000461	AGG	MDKLLFWLGLGAAQKGAGSKPTKQRHPVVSFVIGILVAALVAAGMFLLLVSQR*
AF_2010_repII_A1DRAFT_100261493	F006874	AGG	MLXNKTVAKGVLTGMDVMLCDYRHWLEYDSVALAVLFVSIGLVELIVLSI*
AF_2010_repII_A1DRAFT_100261495	F019919	N/A	MLHHAVAIAHVCGFGAVAEHAMSRMLFVAFAMICWTLPVKAEVLTLSCDGTMKAEDQEKPHAITKMGLVVNFDGGVVTGFTGITARLEEVNANSVSFKGTTSHPSGTEWSVRGSMDRRTGLVSAAVTWFNPRTNML