Scaffold AF_2010_repII_A1DRAFT_10004611

Overview

Basic Information

• Taxon OID: 3300000597
• Scaffold ID: AF_2010_repII_A1DRAFT_10004611
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3763
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001907	Metagenome / Metatranscriptome	619	Y
F005100	Metagenome / Metatranscriptome	412	Y
F015130	Metagenome / Metatranscriptome	257	Y
F068347	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_100046111	F068347	N/A	SATAVERMAVISSVTVVPNARIAGVALTGLHSYRAVAAMGKTLEPDGGERVLPKQEGGRANKREEPLFHAFPNALMRWIVQR*
AF_2010_repII_A1DRAFT_100046114	F005100	AGGA	MSAELVSAELMSDDDEFRRVAEIERAAKGKPSYLDMDAAFCARMYAAITAGLESAPTGVITTPGTQNPRYIPDLTARYHRSRNEW*
AF_2010_repII_A1DRAFT_100046116	F001907	N/A	MKIERFAGHNEAREALVLSVAGVTAILLIEILILLALY*
AF_2010_repII_A1DRAFT_100046119	F015130	GGAGG	MAEVLWVTLLLILITIAGILAFLYFVRITQSVENQRKIKLQGVVKHDWRPTGRIDFTARFEDVGDQSKDKPGEFKLLVEERRIVESIAGNESLEIXWRLATLSEAKAVVTHYHNYLSENSLIKSIPELSAS