Scaffold AF_2010_repII_A1DRAFT_10001220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AF_2010_repII_A1DRAFT_10001220

Scaffold AF_2010_repII_A1DRAFT_10001220

Overview

Basic Information
Taxon OID	3300000597 Open in IMG/M
Scaffold ID	AF_2010_repII_A1DRAFT_10001220 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - 2010 replicate II A1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	6467
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005436	Metagenome / Metatranscriptome	401	Y
F010499	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_100012201	F010499	N/A	RCTSGCLVVHEIRCPVMSQRACSVFGSLVLATLIAAPAAHAVCKSPKNICKHIDDCLQRTSDNTDAQRISQRIREGVRARNGNMVGAGAEACARDLGKKKEWDDWARRCSDLEYVSIARTEMELGKGYCDRYSQ*
AF_2010_repII_A1DRAFT_100012208	F005436	GGA	MPKLHVLDEEFGEDAAAVPHARRHLTGARLLMLAIVALGLGAIGALAFAWSNADGPLRFELQSAASAPKSAQRVAAQEEIERLRGELDALKNDVKELTEAQHQAAHTIATMKAAEEDLRRDVPPPYWYSNPATLDLAIANQPQWAGVAPPPRRPATARSESRGLRKREGAAPASRVSPQ*

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