Scaffold AF_2010_repII_A1DRAFT_10000922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AF_2010_repII_A1DRAFT_10000922

Scaffold AF_2010_repII_A1DRAFT_10000922

Overview

Basic Information
Taxon OID	3300000597 Open in IMG/M
Scaffold ID	AF_2010_repII_A1DRAFT_10000922 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - 2010 replicate II A1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	7206
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023565	Metagenome	209	Y
F067307	Metagenome	125	N
F102296	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_1000092213	F023565	GGAG	VSEMAIDVAETDEELLTFDVSDEALERAAPIIGGVASVVTLNFGTAIIGNCGCPV*
AF_2010_repII_A1DRAFT_100009226	F067307	GAGG	MAIVLGGCAAQRLNVSMYTRTDGAPIDAAKQQAALAHCKGEAVSAPLDPQGVDWGRKEKIIVDACMARNGYIQAQQ*
AF_2010_repII_A1DRAFT_100009227	F102296	AGCAG	MTSEEFLAELETLDVGVVKERIASGVYLRPYKALAQGWVEHKEAIASAEQIALARQAVRDAKWANWIALWALVIAAISLIVAVVK*

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