Scaffold AF_2010_repII_A1DRAFT_10000464

Overview

Basic Information

• Taxon OID: 3300000597
• Scaffold ID: AF_2010_repII_A1DRAFT_10000464
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9243
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008319	Metagenome / Metatranscriptome	335	Y
F019217	Metagenome / Metatranscriptome	231	Y
F019790	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_1000046416	F019217	N/A	MVQVKRIMNRFLIIGLFFSSAVTPYAQAQQPNTAKLKADAQTVVSIIRGDKAKTQAYCQINSLGAEIDQVAQARDEQKADALTKRINDLERQVGPEYLALFDALNNADQNSKDFQDILSMFDTLDESCPH*
AF_2010_repII_A1DRAFT_100004645	F008319	GAG	VSIVEFKRAKLLQNAKLSGISVKDIARALATMAGVKAVSDFDAGLTSGYLEKAEALLELATEFAQERRRND*
AF_2010_repII_A1DRAFT_100004647	F019790	GGA	MVQSFYEADSFYERLTLRLVRERIGHCLRERYPVSKELPPKLLTLVRKLDAIEGKSPRTRTLIGTLDAIEGNYLKRCAPSVEPRSVSASDDWPLCT*