Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1036450

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1036450

Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1036450

Overview

Basic Information
Taxon OID	3300000596 Open in IMG/M
Scaffold ID	KanNP_Total_noBrdU_T14TCDRAFT_1036450 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	551
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002603	Metagenome / Metatranscriptome	544	Y
F048497	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
KanNP_Total_noBrdU_T14TCDRAFT_10364501	F048497	N/A	APTQDKLRHVALDVAAAVVSGNGTRARIVNPFHQVYTVADHKKGKAGYVTMTLEHDVAFVLSSDTQTNGRYEALIENRP*
KanNP_Total_noBrdU_T14TCDRAFT_10364502	F002603	AGGA	MSMTAILVRFPDESVKLDDVEEDRVLTALEVIYEGGSLHGETADFLTRDLERVVVRVYGRNCHFFETYERTICVDIRRGRTIFRYAGLTSKSNN

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