Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1025939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1025939

Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1025939

Overview

Basic Information
Taxon OID	3300000596 Open in IMG/M
Scaffold ID	KanNP_Total_noBrdU_T14TCDRAFT_1025939 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	642
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029703	Metagenome	187	N
F097928	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
KanNP_Total_noBrdU_T14TCDRAFT_10259391	F029703	GAG	MSTDEPVRTDYEFLKGVDYIFLSLDRNLSGEECHE
KanNP_Total_noBrdU_T14TCDRAFT_10259392	F097928	N/A	TLQGWVFVPFFCHNNGINLFAKLFLSEKRNKMRQVERQQLIALGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGLLLTRILERLKRA*

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