Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1003034

Overview

Basic Information

• Taxon OID: 3300000596
• Scaffold ID: KanNP_Total_noBrdU_T14TCDRAFT_1003034
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1970
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000707	Metagenome / Metatranscriptome	926	N
F030525	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
KanNP_Total_noBrdU_T14TCDRAFT_10030341	F000707	GAG	MPRDAFN*VQERNKNMQTKLPINGTIQHPDLAEALRGESGTFFCQQSGQGYIVTAAEGYSIKSLRPVGRKIVEANVVMQTTPEPWAITKISEDVLEFSAIPQQSPRQQRAA*
KanNP_Total_noBrdU_T14TCDRAFT_10030344	F030525	N/A	MRDAEVAYAIHPIVRKYLLTVKDTSEALIACGVPRAANVAQITTGRFLNIDLPSLQEV*