Scaffold AF_2010_repII_A01DRAFT_1010692

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AF_2010_repII_A01DRAFT_1010692

Scaffold AF_2010_repII_A01DRAFT_1010692

Overview

Basic Information
Taxon OID	3300000580 Open in IMG/M
Scaffold ID	AF_2010_repII_A01DRAFT_1010692 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - 2010 replicate II A01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1479
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001907	Metagenome / Metatranscriptome	619	Y
F023565	Metagenome	209	Y
F095183	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A01DRAFT_10106921	F001907	GGA	MRIERFAGHHEAREALVLSVAAVTAIMLIESLILMILY
AF_2010_repII_A01DRAFT_10106923	F023565	N/A	MLLLRFGAAGRNVLMVLTNRNAIYVAEADEELLTSEVSDDALERAAPIIGGVASVATLNFGTFIVGNCGCAV*
AF_2010_repII_A01DRAFT_10106924	F095183	AGG	MSLLQTTDVYGSEEKAARKHPDLALRFALALICVALALVLAGAMFPDAFRPSGEFSLIGP

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