Scaffold AP72_2010_repI_A01DRAFT_1008067

Overview

Basic Information

• Taxon OID: 3300000579
• Scaffold ID: AP72_2010_repI_A01DRAFT_1008067
• Source Dataset Name: Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000257	Metagenome / Metatranscriptome	1447	Y
F000966	Metagenome / Metatranscriptome	819	Y
F085275	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
AP72_2010_repI_A01DRAFT_10080671	F085275	N/A	FTSLNLCSCTKGTDMREQVLLFCLLGLVLAITIMLVIEPGAVTWAVGLIE*
AP72_2010_repI_A01DRAFT_10080672	F000966	GGAG	MPSRFWDPAHWRFRAEESRTIADQMIHEEARAIMRRIAMDYDRLAKLAEAQLADQQAMIGRKT*
AP72_2010_repI_A01DRAFT_10080675	F000257	N/A	RLTNERDFPYLVELALPTDGFRDVVLEIDAFHRERRIPVRRGRSRHEVKQVYIRFCFSDAATAEAFRNRFGGECLTHAPAV*