NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SL_4KL_010_BRINEDRAFT_10163377

Scaffold SL_4KL_010_BRINEDRAFT_10163377


Overview

Basic Information
Taxon OID3300000575 Open in IMG/M
Scaffold IDSL_4KL_010_BRINEDRAFT_10163377 Open in IMG/M
Source Dataset NameAlkaline brine water microbial communities from Picturesque Lake, Kulunda Steppe, Russia - 4KL_010_BRINE
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location NameRussia: Kulunda Steppe, Picturesque Lake
CoordinatesLat. (o)51.43Long. (o)79.52Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100063Metagenome103N

Sequences

Protein IDFamilyRBSSequence
SL_4KL_010_BRINEDRAFT_101633772F100063GAGMSETCGVCGQFTGQTESFDLWIRGMDRRGETDRIEMDVSGVSVGECCGLGVLDKPEEERVDRPYQRYLNETPDGELRYVVMVRDDVDAEDIEIETVSGYGHVQDVSISPSSVRLHPVIGKQLPESMDGYVFNRVD*

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