NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10064610

Scaffold Draft_10064610


Overview

Basic Information
Taxon OID3300000568 Open in IMG/M
Scaffold IDDraft_10064610 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101223Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Draft_100646102F101223GAGGMTEVTQEDXETLKSELNEIIETRLDSFIDEFVATWNELENKESESENCCSCESDNSDTENPAKYIIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNAXVVVLXXQPEMDLETFSSIKRNTLDYVIKQAQEAQAKEKAMKAENSKTPPDVSHISYG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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