Scaffold JGI12270J11330_10040774

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10040774
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2599
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085014	Metagenome / Metatranscriptome	111	Y
F087101	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100407742	F085014	GGA	MRDAARVAQLSAEEAFRLLQQKHTHEHQTAWTRFEVELATRTAEIREHFKDELRCSQSERDDLTRRVEGCLRELADLRERNQELEGEISKAVRRGKLEEVSFEEEARTWHGIAVSEKLPKNGDFILAYRDPSGAALEPRIIVDNKDKAIITEGDLKKLIRDAKERCCPVGIIVAREESQLRQHDRERRWGQEDGVWILRTTRQWLPRDLEVLKPVVERMRSEGADFLQKNSALAEEIRRTFVDLDEVEKELKKAAKAIDVASRLTAKYRERLRDLCGTAASAKIAKPECDGGIRQTAGA*
JGI12270J11330_100407743	F087101	GGAGG	MADMEKVSASGDMPLRVTGEAAKYLSSLPQFHGIPDESLISLAKRRTRLYVRDRWVAIALIIGNRVPIPVPTPEGRPQGTPSEATTPAKLVLINGGRIAR*