Scaffold JGI12270J11330_10014582

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10014582
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5070
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001829	Metagenome / Metatranscriptome	629	Y
F018838	Metagenome / Metatranscriptome	233	Y
F021193	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100145824	F018838	AGGAG	MLPRQNNAQDPVFFQIHRNGSAVDGVSYATLEEASAVLEKAARGGEVAAVNRLDQIVRRYTPDECRAARNFGTKR*
JGI12270J11330_100145826	F001829	GAGG	MRKQYLHLSTYPCDACTGPVVAGSLAVRENVISKETEIRQVGAICLSCGHRQDKATEPACARHLMPMEWAPVSAINARQQTTALVEALNRAELH*
JGI12270J11330_100145829	F021193	AGGAG	MNPDEKQSLEQMLESAIVVSWADLMRDAPTGLIHIEYGFAPGGTLDYLKVWSSLTRGHWL