Scaffold JGI12270J11330_10009435

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10009435
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6579
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000943511	F028392	AGGAG	MPNTIAVVHLPEALRNGSSALVKLAGKIDSFSLVLWRTPESQLKRQIEEDYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEVGDLGTPPQPKRGKLCQQCCFFLGEPEGEVSEITVSKTPEHLVRGSMHGTSGPISTVNRNRSCPSTLPQPLSQ*
JGI12270J11330_100094353	F005112	AGGAG	MSLVAKYKLFWAACIATLCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMILYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRNRKEAARAA*
JGI12270J11330_100094354	F039911	AGGAG	MKYTIAALLAVVVAIAGYFGIRHLTRKDLGFTPAKRYASKLASTLIHTEATAAQEAGVSPAA*
JGI12270J11330_100094355	F002761	AGGAGG	MTFTPSSTSSFAAGAVFWSMVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRLS*
JGI12270J11330_100094356	F025427	AGGAG	MRPGEMEELLASLKTCPVQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETFKKWKEEHDLHSE*
JGI12270J11330_100094357	F027079	AGGAG	VIKSFLNLCLLLFLDMLAYMVAIAAAAAVAWAAVCGARWIFAALRNSVMSLRRRWRKKEMCAHATR*
JGI12270J11330_100094358	F016632	AGGAGG	LTGILEVFALAEIGSGIGFLASWRNKVLKAKVNFFRQPNNKSSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKGERPW*
JGI12270J11330_100094359	F003859	GGAG	MNEWNAERSTGLEMTNVASSWPGASLYKSLKHGWQWRRLKWAVAAASEATQGHEANGVRPGAQEFKTLYDEVATRVQQYSGEASVPIDTLKAKLPALCAIERLANPETSVPQNRLGLTLGVVIASVLGSIGIGVLIGLGTGMAHWIARLFA*