Scaffold JGI12270J11330_10009080

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10009080
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6728
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y
F033229	Metagenome / Metatranscriptome	178	Y
F036885	Metagenome	169	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000908010	F001596	AGGAG	VSWFHSSTTPVDARNHASPAEVVACFQDQRNLLGRLAFLITGDHATAEQTLVQACETTLQGNRPFRDWLFEWAKAATIASAISHGAKAIRICEATYTEQRCLHVEHLSQGDAEERAAGLDLILGTDAQTLIAELDSLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHALTWLQKRQEKPVEENHILARI*
JGI12270J11330_1000908011	F010114	GAGG	MIIELNNDETRLLHTVLLEQAQEHLSYADTSEVAERLCKLATRFERRVREVPNMTTA*
JGI12270J11330_1000908012	F036885	GGGGG	MTDKKDRERVIAEITLSHLMRLGNEQGCPVSREQALAFLNHQGRAFEMWKHMMQAAEEFIAGSLLQHSFSSGGHEGLASRPRAVRSVSDAAR*
JGI12270J11330_100090803	F105952	GGAGG	VSTRQGAANTKRVDSIGTPAGQVSRERLGSTVTFFATEQALADLGIRARLTEIVAKAQSIENGIMQSRSRRKREHAC*
JGI12270J11330_100090805	F033229	AGGAG	MYLTTSLNGVPTIQRDGRNVLGVWDENWDFANEICDLLNSLEDDPHIFLTEHDRKWLKAMNHAFRKVQHA*
JGI12270J11330_100090807	F029198	GAGG	MDSNSRAVRVGGEVIVLHCWACGTAHCVNLELSVPGELAHMVCSNSNCRMSMFLVNELVLDDKTRKQLTKSELNARVAYSRFWK*
JGI12270J11330_100090808	F006399	GGA	MTTPALNSRVQSLVTEYGVFWQFWPQFEQIHGDRRLVGFEVELIGCHTSNLNHVDPRCPTCRTVRAALLSIANLVPADLAVGANFLTYNIDSHSGEILCLPALGNRAAVWVSIYLSWNRSNGQSLETDLLTEVRTFLNKWGIHQR*
JGI12270J11330_100090809	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARRLVTKDVLPEGLIVDLTEVSYVDSVGEQFLKWLAGVGAVFIAGSVYAFVVCDRLRLPLMQEITEPRKQRHGSSGEKSSIKYSRPVEVI*