Scaffold JGI12270J11330_10006793

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10006793
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7938
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000885	Metagenome / Metatranscriptome	849	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000679310	F076450	N/A	MRSDSQGRATQIGRYLNTPLVLNVSVTSASVQLNQNRHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGSGVLFISEIDAQGV*
JGI12270J11330_1000679311	F079694	AGGAG	MPTYQNATPPSALYPGDVGYSWNNEAFPGTTTSGAQFALSTPGGYAPETGFAVRWQTIFGTAPSAVNIRLQGAMADVDAEYMDIDTSTNVAGEGRQVTGIQAKFLRIKLYSSTGGSGLTAKILV*
JGI12270J11330_100067933	F000885	AGGAGG	MASPKVVLIGEVAQIAGVGAVVTGIVLSLHHWGAAAALIGGISAFFVGKKLRGA*