NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10004602

Scaffold JGI12270J11330_10004602


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10004602 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9760
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000275Metagenome / Metatranscriptome1391Y
F044615Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_100046021F000275N/AMTTKTELPASKRRTRAEVQKLVAEFMSSGMRRSEFCQSRGLSFSTLDRHLKKRRWKKRRRPTSSVGRLVPVEVAARKSPTRQEPGCGLAVVLSGGRRI
JGI12270J11330_100046024F044615GAGVPSRLRDGSPTSTALAEKVQAILDDKELTLYRVSQQSAELYGRSSPYFLPHNLYYDLRAGSFRPSIHQTWALSRISGYRVADWLRVFGYNLEDITRLQILLPSKRTVVLDTSLTDANECVPWLDTRHDGTAIPSIAPLARLLREAPARQIGLLQDLSARRFLYAKVGREDAFAFPDLAPGSIVRVNPQIVDSSALRDNSSISDRIFLIEHSKGFCGCRIRVLSNGVIVPFDNGLRYAQVELHCPQEARLWGVVDLEFRPLLGSEDPEIPKDLGRHWTPHPLPTYQDFGQLLKRTRRQRNLSVREAARMSRAIAEVLKDDRYMTSPSSLSDYELRNTPPRDFHKIVTFCSIYGLQFESVMSRMGVDTTEAGTESMPDRYLSRAESTVATKSADADNVPTGFLGKLLEECQEIPFFLRHSLGYFSGSTHVSLDDFFWIGGDDDPLHPYLAKGLVVMVNRRRKTPLHFVSKALWQQPIYVVLKRDATYVAACWGIENDRLVVHPYTRDFHRNEEYRLHQDAEVVGQIVAIARRLF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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